Data Package Summary   View Full Metadata

  • SBC LTER: Reef: Geospatial structure of microsatellite markers for the giant kelp, Macrocystis pyrifera, Santa Barbara CA, 2009
  • Santa Barbara Coastal LTER
  • Johannson, Mattias L
  • Raimondi, Peter T
  • Reed, Daniel C
  • Coelho, Nelson C
  • Serrao, Esther A
  • Alberto, Filipe
  • 2013-10-13
  • Johannson M. L., P. T. Raimondi, D. C. Reed, N. C. Coelho, E. A. Serrao, F. Alberto. 2013. SBC LTER: Reef: Geospatial structure of microsatellite markers for the giant kelp, Macrocystis pyrifera, Santa Barbara CA, 2009. Environmental Data Initiative. http://dx.doi.org/10.6073/pasta/e97394f0394c7911c0457b99ec6df338. Dataset accessed 1/18/2018.
  • Data package includes data and R code for the examination of geospatial genetic structure (SGS) and simulation of inbreeding in giant kelp (Macrocystis pyrifera) from the Santa Barbara Channel, California. Data are reported for microsatellite markers from individual giant kelp plants from Carpinteria Reef, Mohawk Reef and Goleta Bay, collected during September 2009. Relative X and Y coordinates (meters) were recorded for each specimen sampled. R code consists of two scripts, a) to calculate mean number of alleles per locus, and observed and expected heterozygosity, and b) to simulate self-fertilization and sibling/cousin relationships. These data were presented in: Johansson, Mattias L, Raimondi, Peter T, Reed, Daniel C, Coelho, Nelson C, Serrão, Ester A, Alberto, Filipe A. In press. Looking into the black box: simulating the role of self-fertilization and mortality in the genetic structure of Macrocystis pyrifera. Molecular Ecology, 22:4842–4854. These data are also available from: Johansson ML, Raimondi PT, Reed DC, Coelho NC, Serrão EA, Alberto FA (2013) Data from: Looking into the black box: simulating the role of self-fertilization and mortality in the genetic structure of Macrocystis pyrifera. Dryad Digital Repository. doi:10.5061/dryad.s1b07.
  • Geographic Coordinates
    • N: 34.3916319, S: 34.3916319, E: -119.5416933, W: -119.5416933
    • N: 34.3940708, S: 34.3940708, E: -119.72957, W: -119.72957
    • N: 34.4137165, S: 34.4137165, E: -119.8221, W: -119.8221
  • The user of SBC LTER data agrees to contact the data owner (i.e., the SBC investigator responsible for data) prior to publishing. Where appropriate, users whose projects are integrally dependent on SBC LTER data are encouraged to consider collaboration and/or co-authorship with the data owner. The user agrees to cite SBC LTER in all publications that use SBC LTER data by including the following statement in the Acknowledgments: "Data were provided by the Santa Barbara Coastal LTER, funded by the US National Science Foundation (OCE-1232779)". The user agrees to send the full citation of any publication using SBC LTER data to sbclter@msi.ucsb.edu Users are prohibited from selling or redistributing any data provided by SBC LTER. Extensive efforts are made to ensure that online data are accurate and up to date, but SBC LTER will not take responsibility for any errors that may exist. The user agrees also to adhere to the Data Use Agreement of the Long Term Ecological Research Network. Any violation of the terms of this agreement will result in immediate forfeiture of the data and loss of access privileges to other SBC LTER data sets. SBC LTER is committed to protecting the privacy and accuracy of your confidential information. See our Privacy Policy for more information.
  • doi:10.6073/pasta/e97394f0394c7911c0457b99ec6df338
  • https://pasta.lternet.edu/package/eml/knb-lter-sbc/73/5
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